http://www.whofic.com/series.php?seriesid=2812 for the whole complete series. I'm bringing it over a couple chapters at a time, but you can read the whole thing there.
This series is my massive fixit for everything after Journey's End. It was sparked in part by RTD commenting, "She never would have chosen the clone, but we didn't have a choice," or something to that effect. I agree completely. And once Rose doesn't leave her Doctor, everything shifts from then forward. It is also a fixit for End of Time, Children of Earth, and the oops year.